2D-DIGE Protein Profiling Protocol
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Corresponding Organization :
Other organizations : University of Illinois Chicago, University of Oxford, Loyola University Chicago, University of Cincinnati
Variable analysis
- Protein labeling with cyanine dyes (CyDye)
- Isoelectric focusing on nonlinear 18 cm immobilized pH gradient (IPG) 4–7 pH or 7–11 pH strips
- Protein expression levels
- Protein sample amount (100 μg)
- 2D Clean-up Kit (GE Healthcare) for protein precipitation and resuspension in UTC buffer
- IEF buffer composition (8 M urea, 2 M thiourea, 4% w/v Chaps, 10 mM EDTA pH 8.0, 250 mM DTT, plus ampholytes)
- Equilibration in 1% DTT and 2.5% iodoacetamide
- 12% SDS resolving gel for second dimension electrophoresis
- Imaging using Typhoon 9410 Imager (GE Healthcare) with Cy3, Cy5, and Cy2 lasers
- Image analysis using PDQuest version 8 advanced (Biorad)
- No explicit positive or negative controls mentioned
Annotations
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