Isolation and Characterization of Immune Cell Subsets
Peripheral blood mononuclear cells [PBMC] were isolated by Ficoll density gradient centrifugation [Amersham Pharmacia Biotech, Uppsala, Sweden]. Lamina propria mononuclear cells [LPMCs] were isolated as previously described.25 (link),26 (link) Mesenteric lymph nodes [LNs] were smashed into 70-μm nylon strainers [BD Biosciences] and erythrocytes lysed with red blood cell [RBC] lysis buffer [BD Biosciences]. For characterisation of T helper [Th] cell subsets from PBMCs, LNs, and LPMCs, T cells were stained with a combination of fluorochrome-conjugated antibodies as specified in Supplementary Table 2 and sorted [FACSAria III, BD Biosciences], according to the expression of the following specific surface markers combination: CD4+IL-7R+CD25lowCCR6-CXCR3+ [Th1 cells], CD4+IL-7R+CD25lowCCR6+CXCR3+ [Th1/17 cells] and CD4+IL-7R+CD25lowCCR6+CXCR3- [Th17 cells]. These three subsets were further subdivided according to CCR5 expression. Human monocytes for antigen-specificity assays and for generation of monocyte-derived dendritic cells [MoDC] were purified from blood samples by Ficoll density gradient separation and by positive selection using CD14+ selection [CD14 Microbeads, Miltenyi Biotec, Bergisch Gladbach, Germany].
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Isolation of peripheral blood mononuclear cells (PBMCs) by Ficoll density gradient centrifugation
Isolation of lamina propria mononuclear cells (LPMCs) as previously described
Isolation of mesenteric lymph nodes (LNs) by smashing into 70-μm nylon strainers and lysing erythrocytes with red blood cell (RBC) lysis buffer
dependent variables
Characterization of T helper (Th) cell subsets from PBMCs, LNs, and LPMCs by flow cytometry sorting based on the expression of specific surface markers: CD4+IL-7R+CD25lowCCR6-CXCR3+ (Th1 cells), CD4+IL-7R+CD25lowCCR6+CXCR3+ (Th1/17 cells), and CD4+IL-7R+CD25lowCCR6+CXCR3- (Th17 cells)
Further subdivision of the three Th cell subsets based on CCR5 expression
control variables
Purification of human monocytes for antigen-specificity assays and generation of monocyte-derived dendritic cells (MoDCs) by Ficoll density gradient separation and positive selection using CD14+ microbeads
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