Inguinal lymph nodes were harvested, immersed in Optimum Cutting Temperature (OCT) compound (VWR Chemicals), and immediately frozen on dry ice. 35 µm sections were cut using a cryostat (Leica), mounted on Superfrost Ultra Plus slides (Thermo Scientific Gerhard Menzel), fixed in acetone for 10 min at −20 °C, air-dried for 30 min, and stored at −20 °C.
Prior to staining, non-specific antibody binding was blocked using a solution of 1% v/v normal mouse serum, 2% w/v bovine serum albumin (Sigma), and 0.3% v/v Triton-X100 (Sigma). Primary antibodies and secondary reagent were used as detailed in Supplementary Table 1. After final washing, Fluoromount G mounting medium (eBioscience) was applied, followed by a coverslip.
Slides were visualized using a Zeiss LSM 710 confocal microscope. Images were acquired using Zen software (Zeiss). ImageJ (NIH) was used for image processing. Images were analysed in a manner allowing comparison of both overall GC area and proportion of the B cell area occupied by GCs: GC and B cell areas were identified using GL7 and B220 staining respectively, manually defined, and their areas calculated (44 (link)).