All files were acquired in centroid mode and converted to mzData file format using Bruker CompassXport software. The data sets are available at
Comprehensive Metabolite Profiling of Arabidopsis
All files were acquired in centroid mode and converted to mzData file format using Bruker CompassXport software. The data sets are available at
Corresponding Organization : Leibniz Institute of Plant Biochemistry
Protocol cited in 36 other protocols
Variable analysis
- Volume portions of solvent, seed, and leaf extracts
- UPLC/ESI-QTOF-MS analysis results
- Arabidopsis thaliana (ecotype Col-0) grown under controlled conditions
- Methanolic extracts prepared from ground seed and leaf tissue
- Marker compounds: o-Anisic acid, biochanin A, p-coumaric acid, ferulic acid, N-(3-indolylacetyl)-L-valine, kinetin, indole-3-acetonitrile, indole-3-carbaldehyde, kaempferol, phloretin, phlorizin and phenylglycine, rutin, and phenylalanine-d5
- Chromatographic separations performed on an Acquity UPLC system (Waters) with a modified C18 column and a 20 min water/acetonitrile gradient
- Compounds detected by a Bruker MicrOTOF-Q in positive ion mode at a scan rate of 3 Hz
- Mass calibration performed against lithium formiate
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