PCR arrays for the RT2 Profiler™ PCR Array Mouse Adipogenesis (Qiagen, product no. 330,231 and Cat. No. PAMM-049Z) were performed following the manufacturers’ protocol. Gene expression levels were calculated using the ΔΔCt method after normalization to the housekeeping gene expression and determination of the fold change. Each GeneQuery™ plate contains eight controls, five target housekeeping genes (β-actin, GAPDH, LDHA, NONO, and PPIH), and genes encoding for pre-adipocyte cell markers, proliferation, differentiation and adipogenesis, lipid metabolism, and obesity. Gene expression is presented as the log10 of mean values (n = 3 in each group), as previously described [26 (link),40 (link),41 ] (
Analyzing Adipogenesis Gene Expression
PCR arrays for the RT2 Profiler™ PCR Array Mouse Adipogenesis (Qiagen, product no. 330,231 and Cat. No. PAMM-049Z) were performed following the manufacturers’ protocol. Gene expression levels were calculated using the ΔΔCt method after normalization to the housekeeping gene expression and determination of the fold change. Each GeneQuery™ plate contains eight controls, five target housekeeping genes (β-actin, GAPDH, LDHA, NONO, and PPIH), and genes encoding for pre-adipocyte cell markers, proliferation, differentiation and adipogenesis, lipid metabolism, and obesity. Gene expression is presented as the log10 of mean values (n = 3 in each group), as previously described [26 (link),40 (link),41 ] (
Corresponding Organization : NewYork–Presbyterian Brooklyn Methodist Hospital
Other organizations : Tel Aviv University, New York Medical College, Central University of Rajasthan, University of Brescia, Rabin Medical Center, Sheba Medical Center
Variable analysis
- None explicitly mentioned
- Gene expression levels
- Frozen tissues
- Use of RNeasy Lipid Tissue kit (Qiagen, Hilden, Germany) to extract total RNA
- Relative expression method with threshold crossing point (Ct-value) to determine gene expression analysis levels
- Normalization to housekeeping gene expression
- Use of RT2 Profiler PCR Array Mouse Adipogenesis (Qiagen) with pre-defined set of target genes
- Five target housekeeping genes (β-actin, GAPDH, LDHA, NONO, and PPIH)
- Eight controls included in the GeneQuery™ plate
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