Because fMRI and optical experiments usually have similar designs and hypotheses, many analysis approaches suited for fMRI have often been applied with little modification to optical data [94 (link)]. Indeed, much of the analysis of optical imaging has benefited from similar advances in fMRI. However, because of the different biophysics associated with the optical and fMRI techniques, there are a number of specific issues, limitations, and methods specific to the optical technology. Unlike fMRI analysis, which often draws statistical information from the spatial proximity of measurements (e.g., voxels in the volume images) and temporal compression methods from the assumption of canonical temporal shapes of the evoked response (e.g., the Γ function response [95 ]), analysis of optical data has generally focused on more traditional time-series methods, including bandpass filtering, temporal smoothing, and linear deconvolution, to preserve temporal information about the evoked functional hemodynamic response while trying to remove specific artifacts in the measurements, such as cardiac pulsation signals. In the following sections, we discuss the analysis of the temporal information in optical measurements and emphasize the differences in comparison with fMRI data analysis.
Analyzing Temporal Dynamics in Optical Imaging
Partial Protocol Preview
This section provides a glimpse into the protocol.
The remaining content is hidden due to licensing restrictions, but the full text is available at the following link:
Access Free Full Text.
Corresponding Organization :
Other organizations : University of Pittsburgh, Massachusetts General Hospital
Protocol cited in 353 other protocols
Variable analysis
- Not explicitly mentioned
- Not explicitly mentioned
- Spatial resolution of functional MRI
- Temporal resolution of optical methods
- Ability to measure both hemoglobin species more directly in optical methods
- Assumption of canonical temporal shapes of the evoked response (e.g., the Γ function response) in fMRI analysis
- Spatial proximity of measurements (e.g., voxels in the volume images) in fMRI analysis
- Temporal compression methods in fMRI analysis
- Bandpass filtering, temporal smoothing, and linear deconvolution in optical data analysis
Annotations
Based on most similar protocols
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!