Characterization of BnGR2R3-MYB Genes

The detailed chromosome distribution information of each BnGR2R3-MYB genes was obtained from the ramie genome annotation documents. Circos (Krzywinski et al., 2009 (link)) was used to locate all the BnGR2R3-MYB genes on the ramie chromosome. Tandem, segmental duplication and collinearity within species were obtained by using Multiple Collinearity Scantoolkit (MCscanX) (Wang et al., 2012 (link)). Synteny blocks of the orthologous R2R3-MYB genes between ramie and other species were obtained also using MCscanX and both results visualized in TBtools (Chen et al., 2020 (link)). Non-synonymous and synonymous substitution of each duplicated BnGMYB genes were calculated using KaKs_Calculator 2.0 (Wang et al., 2010 (link)).

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Feng X., Abubakar A.S., Chen K., Yu C., Zhu A., Chen J., Gao G., Wang X., Mou P, & Chen P. (2023). Genome-wide analysis of R2R3-MYB transcription factors in Boehmeria nivea (L.) gaudich revealed potential cadmium tolerance and anthocyanin biosynthesis genes. Frontiers in Genetics, 14, 1080909.

Publication 2023

Chromosome Duplicated genes Genes Genome Myb genes Ramie Segmental duplication Synteny

Corresponding Organization : Chinese Academy of Agricultural Sciences

Other organizations : Bayero University Kano

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Variable analysis

independent variables

Circos (Krzywinski et al., 2009)
Multiple Collinearity Scantoolkit (MCscanX) (Wang et al., 2012)
KaKs_Calculator 2.0 (Wang et al., 2010)

dependent variables

Chromosome distribution information of each BnGR2R3-MYB genes
Tandem, segmental duplication and collinearity within species
Synteny blocks of the orthologous R2R3-MYB genes between ramie and other species
Non-synonymous and synonymous substitution of each duplicated BnGMYB genes

control variables

Control variables not explicitly mentioned.

controls

Positive controls not explicitly mentioned.
Negative controls not explicitly mentioned.

Annotations

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