Phylogenetic Analysis of PARC6 and PDV1 Homologs

Protein sequences of AtPARC6, AtPDV1, and their homologs in other species, including Populus trichocarpa, Nicotiana tabacum, Oryza sativa, Zea mays, and Physcomitrium (Physcomitrella) patens et al., were downloaded from National Center for Biotechnology Information (NCBI) database through BLAST search (https://blast.ncbi.nlm.nih.gov/Blast.cgi) (SI Appendix, Table S1). Multiple protein sequence alignment was performed using BioEdit (https://bioedit.software.informer.com/), and phylogeny was analyzed using the neighbor-joining method of MEGA7 (https://www.megasoftware.net). Bootstrap values at the corresponding nodes were based on 1,000 bootstrap replications. Wenxiang diagram of protein sequences was performed as before (34 (link), 35 (link)).

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Sun Q., Cao X., Liu Z., An C., Hu J., Wang Y., Qiao M., Gao T., Cheng W., Zhang Y., Feng Y, & Gao H. (2023). Structural and functional insights into the chloroplast division site regulators PARC6 and PDV1 in the intermembrane space. Proceedings of the National Academy of Sciences of the United States of America, 120(5), e2215575120.

Publication 2023

Nicotiana tabacum Oryza sativa Physcomitrella Populus Protein Protein sequences Replications Sequence alignment Zea mays

Corresponding Organization :

Other organizations : Beijing Forestry University, Beijing University of Chemical Technology

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Variable analysis

independent variables

Protein sequences of AtPARC6, AtPDV1, and their homologs in other species, including Populus trichocarpa, Nicotiana tabacum, Oryza sativa, Zea mays, and Physcomitrium (Physcomitrella) patens et al.

dependent variables

Multiple protein sequence alignment
Phylogeny analyzed using the neighbor-joining method of MEGA7
Wenxiang diagram of protein sequences

control variables

Bootstrap values at the corresponding nodes were based on 1,000 bootstrap replications

controls

Positive control: Not specified
Negative control: Not specified

Annotations

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