Hemibrains were homogenized and divided into cytosolic and membrane fractions as previously described [54 (link),55 (link)]. For immunoblot analysis, 20 μg of total protein per lane was loaded on 4-12% Bis-Tris SDS-PAGE gels and blotted onto polyvinylidene fluoride membranes. To determine the effects of the immunotherapy in levels of α-syn, blotted samples from immunized α-syn tg mice were probed with antibodies against full length human α-syn (1:1000, SYN211, Life Technologies). Incubation with primary antibody was followed by species-appropriate incubation with secondary antibody tagged with horseradish peroxidase (1:5000, Santa Cruz Biotechnology), visualization with enhanced chemiluminescence, and analysis with a Versadoc XL imaging apparatus (BioRad). Analysis of β-actin (Sigma) levels was used as a loading control.
For studying which species the antibodies elicited by AFF 1 recognize, recombinant or 4-hydroxy-2-nonenal-treated α-syn [25 (link)] were loaded on 4-12% Bis-Tris SDS-PAGE gels and analyzed by immunoblot using AFF 1-elicited antibodies as primary antibody. The monoclonal antibody LB509 (Covance) served as positive control.
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