Soil samples adhered to the roots of tomato plants were manually separated from the surrounding bulk soil and collected. The plants were carefully uprooted from soil, collected in sterile polybags and stored at 4 °C for the isolation of rhizobacteria. The rhizosphere and rhizoplane soil were separated from the bulk soil following the method proposed by Barillot et al. [40 (link)]. Briefly, bulk soil was removed shaking plants by hand for 10 min vigorously, paying attention to the roots’ integrity, as long as the roots’ non-adhering soil particles were completely removed. In order to collect rhizosphere and rhizoplane soil, the root system was washed with 500 mL of 0.9% NaCl added with Tween 80 (0.01% v/v) and afterwards 150 mL of bacterial suspension were incubated at 25 °C for 90 min with shaking at 180 rpm.
Rhizosphere Microbiome Isolation in CA Field
Soil samples adhered to the roots of tomato plants were manually separated from the surrounding bulk soil and collected. The plants were carefully uprooted from soil, collected in sterile polybags and stored at 4 °C for the isolation of rhizobacteria. The rhizosphere and rhizoplane soil were separated from the bulk soil following the method proposed by Barillot et al. [40 (link)]. Briefly, bulk soil was removed shaking plants by hand for 10 min vigorously, paying attention to the roots’ integrity, as long as the roots’ non-adhering soil particles were completely removed. In order to collect rhizosphere and rhizoplane soil, the root system was washed with 500 mL of 0.9% NaCl added with Tween 80 (0.01% v/v) and afterwards 150 mL of bacterial suspension were incubated at 25 °C for 90 min with shaking at 180 rpm.
Corresponding Organization : Università Cattolica del Sacro Cuore
Protocol cited in 3 other protocols
Variable analysis
- Conservation agriculture practices adopted since 2011
- Mixture of cover crops (rye, hairy vetch, and radish) sown each year after harvesting the previous main crop and terminated before the next seedbed preparation
- Reduced-tillage (RT) operations (ripper passage and one/two spring harrowing) performed annually before planting the main crop
- Soil samples adhered to the roots of tomato plants
- Rhizosphere and rhizoplane soil separated from the bulk soil
- Crop sequence: 3-year crop rotation including maize, soybean, and processing tomato
- Soil sampling location: Commercial field in Gabbioneta-Binanuova, Cremona, Po Valley (Northern Italy)
- Positive control: Not explicitly mentioned
- Negative control: Not explicitly mentioned
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