Protocol detail

Illumina CardioMetaboChip Genotyping Protocol

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Genotyping was performed using the Illumina CardioMetaboChip v1.0 (Illumina, San Diego, CA) following the manufacturer’s protocol [21 (link), 22 (link)] in a total of 11,582 subjects using DNA purified by column from whole blood (Qiagen, Valencia, CA). The chip has been described elsewhere [4 (link)]. Calling of genotypes was performed using the Illumina Genome Studio software and both samples and SNPs were removed with call rates less than 98%.

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Assimes T.L., Lee I.T., Juang J.M., Guo X., Wang T.D., Kim E.T., Lee W.J., Absher D., Chiu Y.F., Hsu C.C., Chuang L.M., Quertermous T., Hsiung C.A., Rotter J.I., Sheu W.H., Chen Y.D, & Taylor K.D. (2016). Genetics of Coronary Artery Disease in Taiwan: A Cardiometabochip Study by the Taichi Consortium. PLoS ONE, 11(3), e0138014.

Publication 2016

whole blood Genome Studio software

Blood Chip Genome Genotypes Snps

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Protocol cited in 1 other protocol

Variable analysis

independent variables

Genotyping was performed using the Illumina CardioMetaboChip v1.0 (Illumina, San Diego, CA) following the manufacturer's protocol [21 (link), 22 (link)] in a total of 11,582 subjects using DNA purified by column from whole blood (Qiagen, Valencia, CA).

dependent variables

Not explicitly mentioned.

control variables

Calling of genotypes was performed using the Illumina Genome Studio software and both samples and SNPs were removed with call rates less than 98%.

controls

No positive or negative controls were explicitly mentioned.

Annotations

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