Accelerated Functional Profiling of Metagenomes
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Corresponding Organization :
Other organizations : Harvard University, University of California, San Diego, Broad Institute, Northern Arizona University, University of Trento
Protocol cited in 339 other protocols
Variable analysis
- Search strategy comprised of three search phases (tiers)
- Per-species, per-gene alignment statistics
- Taxonomically unclassified per-gene alignment statistics
- Gene abundance values for the community
- Per-species and 'unclassified' contributions to gene abundance values
- Identified and quantified metabolic pathways in the community
- Alignment quality, coverage, and sequence length used to weight per-gene alignment statistics
- Positive control: User-specified (typically comprehensive and nonredundant) protein database used for translated search of unmapped reads
- Negative control: Not explicitly mentioned
Annotations
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