Cambridge: gDNA and total mRNA were extracted from tissue samples (Qiagen AllPrep), and gDNA from whole blood (Tepnel). All DNAs were assayed on Illumina HumanOmni2.5–8 M bead chip arrays; 16 samples were also assayed on Affymetrix SNP6 arrays (Aros, Denmark). Stockholm gDNA samples were assayed on Affymetrix SNP6 arrays, as previously described (Liu et al., 2012 (link)). All mRNAs were profiled on Illumina HT12 v4 BeadChip arrays.
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