Phylogenetic Analysis of Beauveria Strains

Sequences were assembled using Lasergene v15 (DNASTAR, Inc., Madison, WI, USA), and combined with sequences obtained from Genebank (Supplementary Materials Table S1). For the Beauveria strains, we used a backbone tree from Imoulan et al. [48 (link)], and for the wider Cordycypitaceae phylogeny we used a backbone tree from Zhou et al. [49 (link)] with sequences of Paecilomyces hepiali Q.T. Chen and R.Q. Dai ex R.Q. Dai et al. (Cordycipitaceae, Hypocreales) added. Multiple sequence alignments were conducted using MAFFT v7.271 [50 (link)] and trimmed with trimAI 1.2rev59 [51 (link)] or, for protein coding sequences, Gblocks 0.91b [52 (link)]. The trimmed alignments were partitioned according to molecular markers, and, in case of protein-coding loci, the codon position was also partitioned. Maximum likelihood trees were generated with RAxML-NG v. 0.8.0 [53 (link)].