Structure Determination of mitoNEET
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Corresponding Organization : West Virginia University
Other organizations : Marshall University, Nippon Medical School, Ball State University, University of Louisville, Modulation Therapeutics (United States)
Variable analysis
- Purified mitoNEET protein (20 mg/ml)
- Furosemide at an equal molar concentration
- Formation of red crystals
- Crystal growth conditions
- Sitting drop vapor diffusion technique
- Mixing protein and mother liquor in a 1:1 ratio
- Cryoprotection using the mother liquor
- Data collection at the iron peak on the Northeastern Collaborative Access Team beamline 24-ID-C at the Advanced Photon Source
- Data processing using iMOSFLM and Aimless
- Molecular replacement combined with anomalous signals (MR-SAD) using Phaser and PDB 3REE as the search model
- Refinement using phenix
- Model building/rebuilding using Coot
- OMIT map construction by removing the ligand from the final refined structure file, performing three macro-cycles of refinement with simulated annealing, and calculating a |Fo|-|Fc| map with phenix.maps
- Positive control: Not explicitly mentioned.
- Negative control: Not explicitly mentioned.
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