Quantitative RT-PCR Analysis of RNA Levels
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Variable analysis
- Total RNA was prepared using an RNeasy mini kit (Qiagen, Valencia, CA, USA) from cells grown in 96-well plates (around 10 000 cells per well)
- QRT-PCR using TaqMan primer probe sets were performed
- MRNA levels
- Reverse transcription was performed at 48°C for 10 min
- 40 cycles of PCR were conducted at 94°C for 20 s and 60°C for 20 s using the StepOne Plus RT-PCR system (Applied Biosystems, Phoenix, AZ, USA)
- The mRNA levels were normalized to the amount of total RNA present in each reaction as determined for duplicate RNA samples by Ribogreen assay (Life Technologies)
- Positive control: Not explicitly mentioned
- Negative control: Not explicitly mentioned
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