For the ADAR EA mutant RNAseq, total RNA was extracted using RNAdvance magnetic beads (Agencourt), treated using TURBO DNase (Thermo Fisher Scientific), depleted of ribosomal RNA [50 (link)], and treated again using TURBO DNase.
RNA Extraction and Purification for ADAR EA Mutant RNA-seq
For the ADAR EA mutant RNAseq, total RNA was extracted using RNAdvance magnetic beads (Agencourt), treated using TURBO DNase (Thermo Fisher Scientific), depleted of ribosomal RNA [50 (link)], and treated again using TURBO DNase.
Corresponding Organization : Stanford University
Variable analysis
- RNA extraction method (RNeasy Kit vs. RNAdvance magnetic beads)
- DNase I treatment
- CDNA synthesis method (iScriptâ„¢ Advanced cDNA Synthesis Kit vs. TURBO DNase treatment)
- Total RNA extracted
- CDNA synthesized
- Ribosomal RNA depletion
- Amount of total RNA used for cDNA synthesis (3 ug)
- Positive control: Not explicitly mentioned
- Negative control: Not explicitly mentioned
Annotations
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