Nucleosome Reconstitution and H1.8-GFP Binding
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Corresponding Organization : Rockefeller University
Variable analysis
- Presence/absence of H1.8-GFP
- Concentration of H1.8-GFP bound nucleosome in each fraction
- Concentration of nucleosome without H1.8-GFP
- Buffer composition (80 mM PIPES-KOH [pH 6.8], 15 mM NaCl, 60 mM KCl, 30% glycerol, 1 mM EGTA, 1 mM MgCl2, 10 mM β-glycerophosphate, 10 mM sodium butyrate)
- Crosslinking conditions (0.5-time volume of buffer XL containing 3% formaldehyde, 90 min on ice)
- Quenching conditions (30 mM HEPES-KOH (pH 7.4), 150 mM KCl, 1 mM EGTA, 10 ng/μL leupeptin, 10 ng/μL pepstatin, 10 ng/μL chymostatin, 10 mM sodium butyrate, 10 mM β-glycerophosphate, 400 mM glycine, 1 mM MgCl2, 5 mM DTT)
- Sucrose gradient composition (15 mM HEPES-KOH [pH 7.4], 50 mM KCl, 10–22% sucrose, 10 μg/ml leupeptin, 10 μg/ml pepstatin, 10 μg/ml chymostatin, 10 mM sodium butyrate, 10 mM β-glycerophosphate, 1 mM EGTA, 20 mM glycine)
- Centrifugation conditions (32,000 rpm, 4°C, 13 h)
- Nucleosome sample without H1.8-GFP
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