The MR spectra were acquired using a Bruker Avance III 600 MHz/54 mm US-Plus (Bruker Biospin, Rheinstetten, Germany) operating at 600 MHz for proton (1H), equipped with a QCI cryoprobe. All spectra were recorded in an automatic fashion using a Bruker SampleJet and the ICON-NMR software (Bruker Biospin). Proton spectra were obtained at a constant temperature of 310 K (37 °C) using [1 (link)] a standard nuclear overhauser effect spectroscopy (NOESY) pulse sequence (Bruker: noesygppr1d) and [2 (link)] a Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence with presaturation during the relaxation delay (Bruker: cpmgpr1d) to achieve water suppression, and to facilitate the detection of low-molecular-weight species by avoiding the large overlapped signals derived from large molecules, such as proteins and lipids. Measurement and processing were done in full automation using Bruker standard automation programs controlled by ICON-NMR (along with TopSpin). Chemical shift was calibrated to the middle of the alanine peaks at 1.50 ppm.
Serum Metabolic Profiling by NMR Spectroscopy
The MR spectra were acquired using a Bruker Avance III 600 MHz/54 mm US-Plus (Bruker Biospin, Rheinstetten, Germany) operating at 600 MHz for proton (1H), equipped with a QCI cryoprobe. All spectra were recorded in an automatic fashion using a Bruker SampleJet and the ICON-NMR software (Bruker Biospin). Proton spectra were obtained at a constant temperature of 310 K (37 °C) using [1 (link)] a standard nuclear overhauser effect spectroscopy (NOESY) pulse sequence (Bruker: noesygppr1d) and [2 (link)] a Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence with presaturation during the relaxation delay (Bruker: cpmgpr1d) to achieve water suppression, and to facilitate the detection of low-molecular-weight species by avoiding the large overlapped signals derived from large molecules, such as proteins and lipids. Measurement and processing were done in full automation using Bruker standard automation programs controlled by ICON-NMR (along with TopSpin). Chemical shift was calibrated to the middle of the alanine peaks at 1.50 ppm.
Corresponding Organization : Oslo University Hospital
Other organizations : Norwegian University of Science and Technology, Norwegian University of Life Sciences, Fred Hutch Cancer Center, Norwegian Directorate of Health, UiT The Arctic University of Norway
Protocol cited in 1 other protocol
Variable analysis
- None explicitly mentioned
- Metabolic profiles obtained from NMR spectra
- Serum samples were stored at -80°C until metabolic profiling
- Serum samples were slowly thawed at 4°C
- Aliquots of 150 μL were mixed with equal amounts of buffer solution
- MR spectra were acquired using a Bruker Avance III 600 MHz/54 mm US-Plus
- Proton spectra were obtained at a constant temperature of 310 K (37°C)
- Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence was used to facilitate the detection of low-molecular-weight species
- Chemical shift was calibrated to the middle of the alanine peaks at 1.50 ppm
- None explicitly mentioned
- None explicitly mentioned
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