Comprehensive miRNA-Target Interaction Database
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Corresponding Organization : Athena Research and Innovation Center In Information Communication & Knowledge Technologies
Other organizations : University of Peloponnese, Brigham and Women's Hospital, Harvard University, National Technical University of Athens, National and Kapodistrian University of Athens
Protocol cited in 79 other protocols
Variable analysis
- Techniques used to derive the miRNA-gene interactions (low-yield and high-throughput techniques)
- Tissues (85 tissues)
- Cell types (516 cell types)
- Experimental conditions (∼451 experimental conditions)
- Species (18 species)
- Experimentally supported miRNA targets (more than one million entries)
- Positive and negative direct miRNA interactions
- Specific techniques-derived interactions (>10,000 interactions)
- Reporter gene assay-verified miRNA targets (5,100 interactions)
- MiRNA-mRNA chimeric fragments from CLASH, CLEAR-CLIP, and AGO-CLIP experiments (>14,000 interactions)
- Interactions from miRNA-specific transfection/knockdown microarray, RPF-seq, RIP-seq and RNA-seq experiments (>233,000 interactions)
- Not explicitly mentioned
- Reporter gene assays used to verify 5,100 miRNA targets
- Not explicitly mentioned
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