Serum microRNA Extraction and Profiling
Corresponding Organization : University of Zurich
Other organizations : Universidade do Porto, Instituto Português de Oncologia Francisco Gentil, IPO Porto, Luzerner Kantonsspital, Kantonsspital St. Gallen, Kantonsspital Graubünden, St. Claraspital, University of Basel, Klinik Hirslanden, Università della Svizzera italiana, University Hospital of Bern, Ente Ospedaliero Cantonale
Variable analysis
- None explicitly mentioned
- MiRNA expression levels (e.g., cel-miR-39-3p, miR-30b-5p, miR-451a, miR-23a-3p)
- Sample volume (200 μL of serum)
- RNA extraction method (miRNeasy serum kit, Qiagen)
- RNA storage conditions (-80°C)
- Addition of MS2 carrier RNA (final concentration 1.25 μg ml^-1) to Qiazol prior to isolation
- Use of exogenous spike-in miRNA cel-miR-39-3p (5.6 × 10^8 copies) for quality control of extraction efficiency
- Quality control analysis (quantification of cel-miR-39-3p, miR-30b-5p, miR-451a, miR-23a-3p)
- Consistency of extraction (acceptable for all samples)
- Exogenous spike-in miRNA cel-miR-39-3p (5.6 × 10^8 copies)
- None explicitly mentioned
Annotations
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