Phylogenetic Reconstruction of 16S rRNA Genes
Corresponding Organization : Masinde Muliro University of Science and Technology
Variable analysis
- Nucleotide contigs were merged using BioEdit 7.2 to reconstruct the full 16S rRNA genes
- Sequences were aligned with CLUSTAL W
- Phylogenetic tree was constructed with MEGA 11.0 using the neighbor-joining method with 1000 bootstrap analysis
- Microbial identity obtained by searching sequences against the nonredundant nucleotide BLAST database
- None explicitly mentioned
- No positive or negative controls were explicitly mentioned
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