The optimal clustering algorithm was experimentally determined, using Euclidean distance as the measure between clusters. Ward’s method was used for clustering and construction of heterogeneity dendrograms. This method generates multiple partitions of the original image and considers all cluster (similar spectra) combinations using analysis of variance to assess the distance between clusters [51 (link)]. The number of clusters was determined based on technical data and the heterogeneity dendrogram. HCA was performed using OPUS v.7.5 software (Bruker Optik GmbH, Ettlingen, Germany).
Hierarchical Cluster Analysis of 3D FTIR Maps
The optimal clustering algorithm was experimentally determined, using Euclidean distance as the measure between clusters. Ward’s method was used for clustering and construction of heterogeneity dendrograms. This method generates multiple partitions of the original image and considers all cluster (similar spectra) combinations using analysis of variance to assess the distance between clusters [51 (link)]. The number of clusters was determined based on technical data and the heterogeneity dendrogram. HCA was performed using OPUS v.7.5 software (Bruker Optik GmbH, Ettlingen, Germany).
Corresponding Organization : Ural Federal University
Other organizations : Voronezh State Medical Academy named after N.N. Burdenko, Australian Synchrotron, Australian Nuclear Science and Technology Organisation
Variable analysis
- Hierarchical cluster analysis (HCA) algorithm
- Euclidean distance as the measure between clusters
- Ward's method for clustering and construction of heterogeneity dendrograms
- Spectral response of regions within the sample structure
- Spectral differences between clusters
- Spectral region of 1800–950 cm^(-1)
- Second derivative and vector normalization of raw spectral data
- Smoothing of spectra over 17 points
- No positive or negative controls were explicitly mentioned.
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