Absolute quantification of Slc22a3 transcripts in rat placenta (n ≥ 18) was performed by duplex droplet digital PCR (ddPCR) analysis, as previously described [32 (link)]. Briefly, each reaction mixture consisted of 10 µL of ddPCR™ Supermix for Probes, 1 µL of TaqMan®Slc22a3 probe (FAM; Rn00570264_m1, Thermo Fisher Scientific, Waltham, MA, USA), 1 µL of Ywhaz probe (HEX; qRnoCIP0050810, BioRad, Hercules, CA, USA) and 1 µL of cDNA (50 ng/µL), in a total volume of 20 µL. Droplets obtained using a QX200 Droplet Generator were amplified to end-point using a T100™ Thermal Cycler. Results, acquired using a QX200™ Droplet Reader, were evaluated using QuantaSoft™ software. For final data evaluation, only data obtained from wells in which the number of droplets obtained exceeded 13,000 were used. All instruments, consumables, and reagents used in this analysis were obtained from BioRad (Hercules, CA, USA), unless otherwise stated.
Quantifying Slc22a3 Transcripts in Rat Placenta
Absolute quantification of Slc22a3 transcripts in rat placenta (n ≥ 18) was performed by duplex droplet digital PCR (ddPCR) analysis, as previously described [32 (link)]. Briefly, each reaction mixture consisted of 10 µL of ddPCR™ Supermix for Probes, 1 µL of TaqMan®Slc22a3 probe (FAM; Rn00570264_m1, Thermo Fisher Scientific, Waltham, MA, USA), 1 µL of Ywhaz probe (HEX; qRnoCIP0050810, BioRad, Hercules, CA, USA) and 1 µL of cDNA (50 ng/µL), in a total volume of 20 µL. Droplets obtained using a QX200 Droplet Generator were amplified to end-point using a T100™ Thermal Cycler. Results, acquired using a QX200™ Droplet Reader, were evaluated using QuantaSoft™ software. For final data evaluation, only data obtained from wells in which the number of droplets obtained exceeded 13,000 were used. All instruments, consumables, and reagents used in this analysis were obtained from BioRad (Hercules, CA, USA), unless otherwise stated.
Corresponding Organization : University of Hradec Králové
Variable analysis
- None explicitly mentioned
- Absolute quantification of Slc22a3 transcripts in rat placenta
- Total RNA input (1 µg)
- Reverse transcription reaction volume (20 µL)
- Primer and probe concentrations in the ddPCR reaction
- Thermal cycling parameters for cDNA synthesis and ddPCR amplification
- Number of droplets obtained (>13,000) for data evaluation
- Positive control: Ywhaz probe (HEX) used for normalization
- No negative control explicitly mentioned
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