Plasmids were constructed as described previously16 (link) using oligonucleotides listed in Supplementary Table 1. Bacterial strains were cultured in Luria-Bertani broth (LB) containing 50 µg ml−1 Carbenicillin (Roth, 6344.3).
For generation of a plasmid encoding triple HA-tagged SseF, p2643 (sscB sseF::HA) was used and sseF::HA on p2643 was replaced by sseF::3HA using Gibson assembly GA. Primers for generation of vector fragment, check primers and sequence of synthetic sseF::3xHA (gBlocks, IDT) are listed in Supplementary Table 1.
Mutagenesis was performed for plasmids p4286, p4295, p4300, and p4305 encoding sseJ::HaloTag, pipB2::HaloTag, sopD2::HaloTag or sifA::HaloTag, respectively, using primers listed in Supplementary Table 1. Deletion of codons 331-336 in sifA removes the previously described prenylation site24 (link) and was expected to reduce membrane interaction. Mutations Y281D Y284D K288D (sopD2), N309D L312D V316D (sseJ), and Y54D L57D M61D (pipB2) affect coiled-coil (CC) domains that were reported to contribute to membrane interactions of translocated T3SS effector proteins25 (link). Site-directed mutagenesis was performed using the Q5 SDM kit (NEB, E0554S), and resulting plasmids were confirmed by sequencing (SeqLab, Göttingen).
Free full text: Click here