Genome-wide genotyping of mouse populations

All genome-wide genotyping was performed using the first, second, and third iterations of the Mouse Universal Genotyping Array, MUGA, MegaMUGA, and GigaMUGA (GeneSeek, Lincoln, NE) (Collaborative Cross Consortium 2012 (link); Morgan et al. 2015 (link)). Genotypes were called using Illumina BeadStudio (Illumina, Carlsbad, CA) and processed with Argyle (Morgan 2015 (link)). All genotypes are available at Zenodo (https://doi.org/10.5281/zenodo.377036).

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Srivastava A., Morgan A.P., Najarian M.L., Sarsani V.K., Sigmon J.S., Shorter J.R., Kashfeen A., McMullan R.C., Williams L.H., Giusti-Rodríguez P., Ferris M.T., Sullivan P., Hock P., Miller D.R., Bell T.A., McMillan L., Churchill G.A, & de Villena F.P. (2017). Genomes of the Mouse Collaborative Cross. Genetics, 206(2), 537-556.

Publication 2017

Illumina BeadStudio

Genome Genotypes Mouse Muga

Corresponding Organization : University of North Carolina at Chapel Hill

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Protocol cited in 2 other protocols

Variable analysis

independent variables

Mouse Universal Genotyping Array, MUGA, MegaMUGA, and GigaMUGA (GeneSeek, Lincoln, NE)

dependent variables

Genotypes

control variables

Illumina BeadStudio (Illumina, Carlsbad, CA)
Argyle (Morgan 2015)

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