VE-cadherin junction width was quantified using ImageJ and a custom-written Matlab algorithm described previously [3 (link)]. Briefly, a line was drawn perpendicular to the cell junction in ImageJ to obtain a pixel intensity profile across each junction. The intensity profile was fit with a two-Gaussian curve in MATLAB and junction widths were defined as the width of the curve 20% above the baseline pixel intensity.
Quantifying VE-cadherin Junction Widths
VE-cadherin junction width was quantified using ImageJ and a custom-written Matlab algorithm described previously [3 (link)]. Briefly, a line was drawn perpendicular to the cell junction in ImageJ to obtain a pixel intensity profile across each junction. The intensity profile was fit with a two-Gaussian curve in MATLAB and junction widths were defined as the width of the curve 20% above the baseline pixel intensity.
Corresponding Organization : Cornell University
Variable analysis
- Simvastatin concentration (0 and 1 μM)
- VE-cadherin junction width
- Time post-confluence (2 days)
- Cell type (endothelial monolayers)
- Substrate (polyacrylamide gels)
- Fixation and permeabilization (3.7% formaldehyde and 1% Triton)
- Primary antibody (goat polyclonal VE-cadherin, 1:100 dilution)
- Secondary antibody (Alexa Fluor 568 donkey anti-goat, 1:200 dilution)
- Microscope setup (Zeiss Axio Observer.Z1m, Hamamatsu ORCA-ER camera, 20x objective)
- Negative control (0 μM simvastatin)
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