To visualize newly deposited CaCO3 of the skeleton, live animals were incubated with Calcein (Sigma) as described in [41 (link)]. To understand the spatial distribution and quantity of proliferating cells during juvenile sea urchin growth assays of cell proliferation were carried out using the Click-iT® EdU Alexa Flour® 555HCS (Life Technologies) and Click-iT™ EdU Cell Proliferation Kit for Imaging Alexa Flour™ 647 (Thermo Fisher Scientific) following [41 (link)]. Cells were quantified for analyzed images using ImageJ and R. Additional details of Calcein staining, proliferative staining and imaging can be found in Additional file 1: Methods.
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