Chromosome Assignment of Assembled Avian Genome

Sequenced reads were assembled and attempts were made to assign the largest contiguous blocks of sequence to chromosomes using a genetic linkage map21 (link), fingerprint map and synteny with the chicken genome assembly Gallus_gallus-2.1, a revised version of the original draft6 (link) (Supplementary Note 1).

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Warren W.C., Clayton D.F., Ellegren H., Arnold A.P., Hillier L.W., Künstner A., Searle S., White S., Vilella A.J., Fairley S., Heger A., Kong L., Ponting C.P., Jarvis E.D., Mello C.V., Minx P., Lovell P., Velho T.A., Ferris M., Balakrishnan C.N., Sinha S., Blatti C., London S.E., Li Y., Lin Y.C., George J., Sweedler J., Southey B., Gunaratne P., Watson M., Nam K., Backström N., Smeds L., Nabholz B., Itoh Y., Whitney O., Pfenning A.R., Howard J., Völker M., Skinner B.M., Griffin D.K., Ye L., McLaren W.M., Flicek P., Quesada V., Velasco G., Lopez-Otin C., Puente X.S., Olender T., Lancet D., Smit A.F., Hubley R., Konkel M.K., Walker J.A., Batzer M.A., Gu W., Pollock D.D., Chen L., Cheng Z., Eichler E.E., Stapley J., Slate J., Ekblom R., Birkhead T., Burke T., Burt D., Scharff C., Adam I., Richard H., Sultan M., Soldatov A., Lehrach H., Edwards S.V., Yang S.P., Li X., Graves T., Fulton L., Nelson J., Chinwalla A., Hou S., Mardis E.R, & Wilson R.K. (2010). The genome of a songbird. Nature, 464(7289), 757-762.

Publication 2010

Chromosomes Gallus gallus Genetic linkage Genome Synteny

Corresponding Organization :

Other organizations : University of Illinois System, Uppsala University, University of California, Los Angeles, Wellcome Sanger Institute, European Molecular Biology Laboratory, Genomics England, Duke Medical Center, Duke University Hospital, Oregon Health & Science University, University of Illinois Urbana-Champaign, The Pirbright Institute, University of Kent, Universidad de Oviedo, Weizmann Institute of Science, Institute for Systems Biology, University of Colorado System, Genome British Columbia, Roslin Institute, Freie Universität Berlin, Evolutionary Genomics (United States), Louisiana State University

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Variable analysis

independent variables

Sequenced reads were assembled
Attempts were made to assign the largest contiguous blocks of sequence to chromosomes using a genetic linkage map21, fingerprint map and synteny with the chicken genome assembly Gallus_gallus-2.1

dependent variables

Chromosomal assignments of the largest contiguous blocks of sequence

control variables

Genetic linkage map21
Chicken genome assembly Gallus_gallus-2.1

Annotations

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