Microscopy pictures from the red fluorescence channel were analyzed using Fiji (79 (link)). Using the threshold function, images were converted to binary images, and the number of PI-positive nuclei was enumerated for each image using macro batch analysis and the Particle Analyzer tool. Based on the obtained counts of PI-positive kidney cells, the percentage of dead kidney cells was calculated in relation to the maximal number of dead cells.
Live-cell Imaging of C. albicans-Induced Cell Death
Microscopy pictures from the red fluorescence channel were analyzed using Fiji (79 (link)). Using the threshold function, images were converted to binary images, and the number of PI-positive nuclei was enumerated for each image using macro batch analysis and the Particle Analyzer tool. Based on the obtained counts of PI-positive kidney cells, the percentage of dead kidney cells was calculated in relation to the maximal number of dead cells.
Corresponding Organization : Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI)
Other organizations : King's College London, Friedrich Schiller University Jena
Protocol cited in 1 other protocol
Variable analysis
- Concentration of human albumin (Albuman; Sanquin Plasma Products B.V.) in the culture medium (10 mg/ml, 1 mg/ml, 0.1 mg/ml)
- Percentage of dead kidney cells
- Confluent monolayer of HEK293A cells
- Propidium iodide (PI) staining at 4 μg/ml concentration
- Imaging at 37°C and 5% CO2
- Imaging duration of 18 h
- Imaging frequency of 20 min intervals
- Imaging magnification of 10×
- Four independent positions per well
- Culture medium containing human albumin
- Culture medium without human albumin
Annotations
Based on most similar protocols
As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.
About PubCompare
Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.
We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.
However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.
Ready to get started?
Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required
Revolutionizing how scientists
search and build protocols!