Cells were imaged for 10 minutes before perturbation and 20 minutes following perturbation (30 min total). PtK1 cell boundaries were detected from the fluorescence microscopy data using a threshold method. Once identified, the edge was then subdivided into 1 micron long segments and their respective velocities were calculated as described previously (25 (link)). For inhibitor-treated experiments, results were obtained from 3–4 independent experiments. For BrafV600E overexpression experiments, results were obtained from 2 independent experiments.
Visualizing Actin Dynamics in PtK1 Cells
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Corresponding Organization :
Other organizations : Harvard University, University of California, San Francisco
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Variable analysis
- Perturbation (treated vs. untreated with U0126)
- Cell boundary velocity (measured from fluorescence microscopy data)
- PtK1 cell type
- Ectopic expression of EmeraldGFP-tagged LifeAct
- Cell culture conditions (37°C, 5% CO2, 48-hour incubation)
- Microscopy setup (Nikon Ti motorized inverted microscope, Yokogawa CSU-X1 spinning disk confocal, 491 solid-state laser, 100x 1.45 N.A. objective, Hamamatsu ORCA-AG cooled CCD camera, Metamorph software)
- Imaging conditions (10 minutes before and 20 minutes after perturbation, 30 min total)
- Cell culture medium (L-15 with 10% FBS, 20 mM HEPES, 0.03 U/ml Oxyrase)
- Microscopy setup for U0126 experiments (Nikon TE2000 inverted microscope, Yokogawa CSU-10 spinning disk confocal, 488 solid-state laser, 60x 1.4 N.A. objective, Andor Clara cooled CCD camera, NIS Elements software)
- Not specified
- Not specified
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