Data from the qPCR were analyzed using iCycler iQ™ software (Real-Time Detection System Software (Bio-Rad, Windows ver. 3.0). The raw fluorescence data were analyzed using LinRegPCR software [42 (link)] to obtain the mean PCR efficiency for each primer pair. Relative gene expression was determined and statistically analyzed (P < 0.05) using the REST-2009© (Relative Expression Software Tool, ver. 2009, [71 (link)]) with PCR efficiency correction and normalization by two reference genes as validated for this plant material in the present work, and compared with the 2-ΔΔCq method.
Somatic Embryo Development Analysis
Data from the qPCR were analyzed using iCycler iQ™ software (Real-Time Detection System Software (Bio-Rad, Windows ver. 3.0). The raw fluorescence data were analyzed using LinRegPCR software [42 (link)] to obtain the mean PCR efficiency for each primer pair. Relative gene expression was determined and statistically analyzed (P < 0.05) using the REST-2009© (Relative Expression Software Tool, ver. 2009, [71 (link)]) with PCR efficiency correction and normalization by two reference genes as validated for this plant material in the present work, and compared with the 2-ΔΔCq method.
Corresponding Organization : Universidade de Vigo
Other organizations : Universidade de Santiago de Compostela
Protocol cited in 1 other protocol
Variable analysis
- Developmental stages of grapevine somatic embryos
- Percentages of grapevine somatic embryos in different developmental stages
- Relative water content
- ABA and ABA-GE contents in the somatic embryo aggregates
- Relative gene expression
- All experiments were repeated at least twice independently to ensure the reproducibility of the results
- Positive controls not explicitly mentioned
- Negative controls not explicitly mentioned
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