Protocol detail

Identifying Functional Copy Number Variations

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Sanchez-Vega F., Mina M., Armenia J., Chatila W.K., Luna A., La K.C., Dimitriadoy S., Liu D.L., Kantheti H.S., Saghafinia S., Chakravarty D., Daian F., Gao Q., Bailey M.H., Liang W.W., Foltz S.M., Shmulevich I., Ding L., Heins Z., Ochoa A., Gross B., Gao J., Zhang H., Kundra R., Kandoth C., Bahceci I., Dervishi L., Dogrusoz U., Zhou W., Shen H., Laird P.W., Way G.P., Greene C.S., Liang H., Xiao Y., Wang C., Iavarone A., Berger A.H., Bivona T.G., Lazar A.J., Hammer G.D., Giordano T., Kwong L.N., McArthur G., Huang C., Tward A.D., Frederick M.J., McCormick F., Meyerson M., Van Allen E.M., Cherniack A.D., Ciriello G., Sander C, & Schultz N. (2018). Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell, 173(2), 321-337.e10.

Publication 2018

A gene Copy number variants Deletions Gene amplifications Gene expression Genes Oncogenic Tumor

Corresponding Organization :

Other organizations : Memorial Sloan Kettering Cancer Center, University of Lausanne, SIB Swiss Institute of Bioinformatics, Dana-Farber Cancer Institute, Harvard University, Princeton University, Broad Institute, The University of Texas at Dallas, James S. McDonnell Foundation, Washington University in St. Louis, Institute for Systems Biology, Bilkent University, Van Andel Institute, Translational Therapeutics (United States), University of Pennsylvania, The University of Texas MD Anderson Cancer Center, Tesaro (United States), Mayo Clinic, Columbia University Irving Medical Center, Fred Hutch Cancer Center, UCSF Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, University of Michigan–Ann Arbor, Michigan Medicine, Peter MacCallum Cancer Centre, University of Melbourne, Baylor College of Medicine

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