Ovarian Cancer Transcriptome Analysis

We interrogated the transcriptomes of a cell line derived from a serous borderline tumor, in addition to three sarcomas and 40 ovarian carcinomas obtained from the OvCaRe (Ovarian Cancer Research) frozen tumor bank. Pathology review, sample preparation, RNA extraction, RNA-Seq library construction and RNA-Seq sequence data generation using Illumina GA were performed as previously described [14] (link), [15] (link). The RNA-Seq datasets used in this study are listed in Table 1, which provides a summary-level description of each sample. For each case we list data acquisition statistics, the tumor type and subtype and the number of predictions made by deFuse.