Synthesis of Modified Oligonucleotides
Corresponding Organization : Tohoku University
Variable analysis
- Oligonucleotide synthesis scale (1 μmol)
- DNA automated synthesizer (Applied Biosystems, 392 DNA/RNA Synthesizer)
- Phosphoramidite chemistry
- Reagents (Glen Research, Sigma-Aldrich)
- Ultra-mild phosphoramidites (Pac-dA, Tac-dG, Ac-dC, T)
- Activator (0.25 M 5-benzylthio-1H-tetrazole (BTT) in CH3CN)
- Deblocking solution (3% dichloroacetic acid (DCA) in CH2Cl2)
- Capping reagent (5% Tac2O and 16% N-methylimidazole in THF)
- Oligonucleotide sequence and structure
- Conventional phosphoramidite chemistry
- Fully natural oligonucleotides purchased from Japan Bio Service Co., Ltd.
- Positive control: Oligonucleotides incorporating the original 'N'Pu and 'O'Pu, synthesized as previously reported [31]
- Negative control: Fully natural oligonucleotides purchased from Japan Bio Service Co., Ltd.
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