The analysis algorithms and parameters used to track individual mNG molecules were previously described in Schwartz et al. (2017) (link). Briefly, tracks were analyzed using home-built MATLAB code that localized single particles per frame and determined connections between frames. The collected tracks were fitted to a two-component distribution to determine the off-rates of Syk at the membrane (Schwartz et al., 2017 (link)).
TIRF Microscopy for Tracking Single Proteins
The analysis algorithms and parameters used to track individual mNG molecules were previously described in Schwartz et al. (2017) (link). Briefly, tracks were analyzed using home-built MATLAB code that localized single particles per frame and determined connections between frames. The collected tracks were fitted to a two-component distribution to determine the off-rates of Syk at the membrane (Schwartz et al., 2017 (link)).
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Corresponding Organization :
Other organizations : University of New Mexico, New Mexico Cancer Center, Carnegie Mellon University
Variable analysis
- Type of microscope (inverted microscope IX71; Olympus)
- Type of TIRF objective (150x/1.45 NA oil-immersion, TIRF objective U-APO; Olympus)
- Wavelength of laser diode for AF647 excitation (637-nm laser diode HL63133DG; Thorlabs)
- Wavelength of laser for fluorescence excitation of mNG (488-nm laser Cyan Scientific; Spectra-Physics)
- Localization of single mNG molecules per frame
- Connections between frames for tracked mNG molecules
- Off-rates of Syk at the membrane
- Quad-band dichroic and emission filter set (LF405/488/561/635-A; Semrock) for sample illumination and emission
- Two-channel splitter with a 655-nm dichroic (Semrock) and 584/20-nm and 690/20-nm additional emission filters for separating emission light onto different quadrants of the EMCCD camera (iXon 897; Andor Technologies)
- Pixel size of 0.106 μm
- Acquisition rate of 10 frames/second (100 ms exposure time)
- Home-built MATLAB code used to analyze the collected tracks, including localization of single particles per frame and determination of connections between frames, as previously described in Schwartz et al. (2017)
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