Lipid Annotation and Quantification

Lipid classes are: PE, phosphatidylethanolamines; LPE; lyso-phosphatidylethanolamines; PE-O, 1-alkyl-2-acylglycerophosphoethanolamines; PS, phosphatidylserines; PC, phosphatidylcholines; PC-O, 1-alkyl-2-acylglycerophosphocholines; LPC, lysophosphatidylcholines; SM, sphingomyelins; PA, phosphatidic acids; PG, phosphatidylglycerols; PI, phosphatidylinositols; DAG, diacylglycerols; TAG, triacylglycerols; CL, cardiolipins; LCL, triacyl-lysocardiolipins; Cer, ceramides; Chol, cholesterol; CholEst, cholesterol esters.
Individual molecular species are annotated as follows: :/:. For example, PC 18:0/18:1 stands for a phosphatidylcholine comprising the moieties stearic (18:0) and oleic (18:1) fatty acids. If the exact composition of fatty acid or fatty alcohol moieties is not known, the species are annotated as: :. In this way, PC 36:1 stands for a PC species having 36 carbon atoms and one double bond in both fatty acid moieties.

Free full text: Click here

Herzog R., Schwudke D., Schuhmann K., Sampaio J.L., Bornstein S.R., Schroeder M, & Shevchenko A. (2011). A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biology, 12(1), R8.

Publication 2011

Carbon Cardiolipins Ceramides Cholesterol Cholesterol esters Diacylglycerols Fatty acid Fatty alcohol Lipid Lysophosphatidylcholines Phosphatidic acids Phosphatidylcholine Phosphatidylethanolamines Phosphatidylglycerols Phosphatidylinositols Phosphatidylserines Sphingomyelins Triacylglycerols

Corresponding Organization :

Other organizations : Max Planck Institute of Molecular Cell Biology and Genetics, University Hospital Carl Gustav Carus, TU Dresden

Top 5 similar protocols

Protocol cited in 21 other protocols

Variable analysis

independent variables

Lipid classes are: PE, phosphatidylethanolamines; LPE; lyso-phosphatidylethanolamines; PE-O, 1-alkyl-2-acylglycerophosphoethanolamines; PS, phosphatidylserines; PC, phosphatidylcholines; PC-O, 1-alkyl-2-acylglycerophosphocholines; LPC, lysophosphatidylcholines; SM, sphingomyelins; PA, phosphatidic acids; PG, phosphatidylglycerols; PI, phosphatidylinositols; DAG, diacylglycerols; TAG, triacylglycerols; CL, cardiolipins; LCL, triacyl-lysocardiolipins; Cer, ceramides; Chol, cholesterol; CholEst, cholesterol esters.

dependent variables

Not explicitly mentioned.

control variables

Not explicitly mentioned.

controls

No positive or negative controls specified.

Annotations

Based on most similar protocols

Etiam vel ipsum. Morbi facilisis vestibulum nisl. Praesent cursus laoreet felis. Integer adipiscing pretium orci. Nulla facilisi. Quisque posuere bibendum purus. Nulla quam mauris, cursus eget, convallis ac, molestie non, enim. Aliquam congue. Quisque sagittis nonummy sapien. Proin molestie sem vitae urna. Maecenas lorem.

As authors may omit details in methods from publication, our AI will look for missing critical information across the 5 most similar protocols.

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Revolutionizing how scientists
search and build protocols!