Tag-RFP was inserted downstream of CHOP, separated by a T2A as described previously15 . The following sgRNA sequence was used: 5ʹ-UGCUCCCAAUUGUUCAUGCU-3ʹ (Merck). Several clones were genotyped by PCR (primers: TATCTTCATACATCACCACACCTGA and TTCTAAAACACATCAGAGATTGGGG) and Sanger sequencing. Validation experiments were performed with two homozygote (518/535) and two heterozygote (403/407) clonal lines. All other experiments were performed with both homozygote lines.
CRISPR-mediated Genetic Modifications
Tag-RFP was inserted downstream of CHOP, separated by a T2A as described previously15 . The following sgRNA sequence was used: 5ʹ-UGCUCCCAAUUGUUCAUGCU-3ʹ (Merck). Several clones were genotyped by PCR (primers: TATCTTCATACATCACCACACCTGA and TTCTAAAACACATCAGAGATTGGGG) and Sanger sequencing. Validation experiments were performed with two homozygote (518/535) and two heterozygote (403/407) clonal lines. All other experiments were performed with both homozygote lines.
Corresponding Organization : UK Dementia Research Institute
Other organizations : Cancer Research UK, Open Targets
Variable analysis
- Insertion of Cas9 upstream of GAPDH
- Insertion of Tag-RFP downstream of CHOP, separated by a T2A
- Cas9-editing efficiency
- Percentage of BFP+/GFP- (edited) to BFP+/GFP+ (total transduced) cells
- Dissociation of neurons on d8 for flow cytometry
- Use of CytoFLEX S (Beckman Coulter) for flow cytometry
- Use of FlowJo version 10.8.1 Software for macOS (BD Life Sciences) for data analysis
- Positive control: Transduction of d4 neurons with a lentiviral vector encoding BFP, GFP and a sgRNA for GFP
- Negative control: Not explicitly mentioned
Annotations
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