Grains of Nimubai and XQ754 plants were sampled at 5, 10, 15, 20, and 25 days after pollination (dap) for RNA extraction. Each sample consisted of grains from nine individuals. Total RNA was extracted from the grains using Trizol Reagent (Takara) and Fruit-mate for RNA purification (Takara), according to the manufacturer's instructions. The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific, Waltham, MA, USA). Equal amounts of RNA from each sample of the identical accessions were pooled to construct two cDNA libraries [26] (link), [27] (link).
Transcriptome Analysis of Hulless Barley
Grains of Nimubai and XQ754 plants were sampled at 5, 10, 15, 20, and 25 days after pollination (dap) for RNA extraction. Each sample consisted of grains from nine individuals. Total RNA was extracted from the grains using Trizol Reagent (Takara) and Fruit-mate for RNA purification (Takara), according to the manufacturer's instructions. The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific, Waltham, MA, USA). Equal amounts of RNA from each sample of the identical accessions were pooled to construct two cDNA libraries [26] (link), [27] (link).
Protocol cited in 1 other protocol
Variable analysis
- Tibetan hulless barley variety (XQ754 and Nimubai)
- Amylose content
- β-glucan content
- Gene expression profiles (through RNA extraction and cDNA library construction)
- Growing conditions (normal conditions in three fields in Chengdu, Sichuan Province of China)
- Sampling time points (5, 10, 15, 20, and 25 days after pollination)
- Positive control: Not specified
- Negative control: Not specified
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