In order to evaluate the coverage by array probes for all CNVR sets, we used bedtools (v2.29.2) [67 (link)] intersect to determine all markers falling within a respective CNVR and then counted the number of markers, reporting zero for no intersection. For this we used array probe maps from several chip designs from [4 (link)]: Illumina’s OmniExpress, CytoSNP850, Omni25, Omni5 as well as Affymetrix SNP 6.0 and CytoScan HD
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