Larvae were reared, dissected and processed as previously described with analysis of hemisegment A2 (Schuster et al., 1996 (link); Grice et al., 2015a (link),b (link)), and at least 23 NMJs per genotype per stage were scored. Ectopic branch contact analysis was performed using L3 larval hemisegments A1 to A3, and 14 flies per genotype were scored. For axonal bruchpilot (Brp) localization studies, the transverse nerve (TN) section bypassing muscle 6 and 7 in hemisegments A2 and A3 was used. For immunohistochemistry, anti-discs large (DLG, DSHB), anti-HRP (Jackson), anti-Bruchpilot (DSHB) and anti-HA (Santa Cruz) were all used at 1/100 in combination with secondary antibodies, AlexaFluor 488 goat anti-rabbit and AlexaFluor 633 goat anti-mouse (Invitrogen) at 1/1000. Z-stacks were taken using a Leica SP5 laser confocal microscope and analysis performed using ImageJ and Photoshop (Adobe).
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