ATP and glycerol were added to buffers all along the procedure to preserve the interactions between the 20S core and 19S regulatory particles and therefore to maintain 26S proteasome stability [22 (link)]. The 26S proteasome purification was performed as previously reported [18 (link)] with slightly modifications. The active fractions recovered after the chromatography on Phenyl Sepharose column were dialyzed against 25 mM Tris-HCl, pH 7.5 and loaded onto a Superose 6 PC 3.2/30 column (Pharmacia Biotech, Pittsburgh, PA, USA) connected to a SMART System (Pharmacia Biotech). The elution buffer was 25 mM Tris-HCl, pH 7.5 added with 50 mM NaCl and the flow rate was 0.1 mL·min−1. Active fractions were pooled and the purified proteasome was stored in 25 mM Tris-HCl pH 7.5, 1 mM ATP and 10% glycerol.
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