Antigen Prediction Using VaxiJen

The VaxiJen server [27 ] is implemented in Perl, with an interface written in HTML. VaxiJen identifies bacterial, viral and tumour antigens using three different models, derived in the present study. Protein sequences are uploaded as single or multiple files in plain or fasta format respectively. The results page reports antigen probability (as a fraction of unity) for each protein and a statement of antigen status ("probable Antigen" versus "Probable Non-Antigen").

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Doytchinova I.A, & Flower D.R. (2007). VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinformatics, 8, 4.

Publication 2007

Antigen Bacterial viral Protein Protein sequences Tumour antigens

Corresponding Organization :

Other organizations : Medical University of Sofia, University of Oxford

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Variable analysis

independent variables

Protein sequences uploaded as single or multiple files in plain or fasta format

dependent variables

Antigen probability (as a fraction of unity) for each protein
Statement of antigen status ("probable Antigen" versus "Probable Non-Antigen")

control variables

Control variables not explicitly mentioned

Annotations

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