ChIP was conducted according to the protocol in a previous study [40] (link). Briefly, micrococcal nuclease was used to fragment chromatin. After that, the chromatin fragments were incubated with magnetic beads (Biogle, Wuxi, China). The DNA-bead complex was immunoprecipitated with anti-H3K27me3 antibody (Millipore, Billerica, USA) or negative control IgG. The primers for the promoter of the RASGRP1 gene used for ChIP-qPCR were as follows: forward primer 5′-CTCTCCGAATTCCCCATTGTG-3′ and reverse primer 5′-AAATCAGAGCTGCATCCAC-3′.
Xiao L., Qiao J., Huang Y., Tan B., Hong L., Li Z., Cai G., Wu Z., Zheng E., Wang S, & Gu T. (2024). RASGRP1 targeted by H3K27me3 regulates myoblast proliferation and differentiation in mice and pigs : RASGRP1 regulates myoblast proliferation and differentiation. Acta Biochimica et Biophysica Sinica, 56(3), 452-461.
Chromatin fragmentation using micrococcal nuclease
dependent variables
Enrichment of DNA fragments bound to H3K27me3 histone modification
control variables
Incubation of chromatin fragments with magnetic beads
Immunoprecipitation with anti-H3K27me3 antibody
Immunoprecipitation with negative control IgG
controls
Positive control: Anti-H3K27me3 antibody
Negative control: IgG
Annotations
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