For short read Illumina sequencing, the genomic DNA was isolated from fresh leaves using a modified CTAB protocol (Sahu and Thangaraj, 2012 (link)). The extracted DNA was used to create four paired‐end libraries (170, 350, 500, and 800 bp) and four mate‐pair libraries (2, 6, 10 and 20 Kb) using the Illumina standard methods (San Diego, CA). Following that, the sequencing was performed by employing a whole‐genome shotgun sequencing approach on an Illumina HiSeq 2000 platform (San Diego).
Genome Sequencing of Dipterocarpus and Hopea
For short read Illumina sequencing, the genomic DNA was isolated from fresh leaves using a modified CTAB protocol (Sahu and Thangaraj, 2012 (link)). The extracted DNA was used to create four paired‐end libraries (170, 350, 500, and 800 bp) and four mate‐pair libraries (2, 6, 10 and 20 Kb) using the Illumina standard methods (San Diego, CA). Following that, the sequencing was performed by employing a whole‐genome shotgun sequencing approach on an Illumina HiSeq 2000 platform (San Diego).
Corresponding Organization : University of Chinese Academy of Sciences
Other organizations : Technical University of Denmark, Sichuan University, Xi'an Jiaotong University, Southwest Forestry University, Yunnan Academy of Forestry, Chinese Academy of Forestry, University of Copenhagen
Variable analysis
- Collection location: Ruili Botanical Garden (Yunnan, China)
- Genome sequencing: Using PromethION Nanopore sequencer with long-read DNA sequencing
- Genome assembly: Using Illumina short-read sequencing (HiSeq 2000 platform)
- Plant species: Dipterocarpus turbinatus and Hopea hainanensis
- DNA extraction method: QIAGEN® Genomic kits and modified CTAB protocol
- Library preparation: Illumina standard methods for paired-end and mate-pair libraries
- No explicit positive or negative controls mentioned
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