Mice were infected with H37Rv Mtb-mCherry and sacrificed at D10 and D14. Lungs were excised and submerged in BD Cytofix fixative solution diluted 1:3 with PBS for 24hr at 4°C. Lungs were washed 2x in PBS and dehydrated in 30% sucrose for 24hr prior to OCT embedding and rapid freezing in a methylbutane-dry ice slurry. 20um sections were stained overnight at RT (with the following antibodies: CD11c BV480; HL3 (BD), CD11b BV510; M1/70 (BD), CD45.2 AF700; 104 (BioLegend), MHC-II APC-Fire750; M5/114.15.2 (BioLegend), Siglec-F BV421; E50-2440 (BD), pS6 AF488; 2F9 (Cell Signaling), CD3 CF633; 17A2, CD4 CF660C; RM4-5) and coverslipped with Fluoromount G mounting media (Southern Biotec). Images were acquired on a Leica SP8X confocal microscope, compensated for fluorophore spillover using LAS X (Leica), and analyzed with Imaris (Bitplane) and FlowJo (11 (link)). More details can be found in Supplemental Fig. 3.