The cells were gently recovered from each plate with an inoculation loop and suspended in PBS (30 ml). For removal of the cells and debris, the suspensions were first centrifuged at 5000 × g for 15 min at 4°C, and the resulting supernatants were centrifuged at 15 000 × g for 15 min at 4°C. The supernatants were filtered through 0.45-μm pore syringe filters and centrifuged at 100 000 × g for 1 h at 4°C to recover EVs. EVs were analyzed by nanoparticle tracking analysis (NTA) on an LM10 nanoparticle analysis system, coupled with a 488-nm laser and equipped with an SCMOS camera and a syringe pump (Malvern Panalytical, Malvern, United Kingdom), as previously published (Reis et al. 2021 (link)). Data were acquired and analyzed using the NTA 3.0 software (Malvern Panalytical).
Extracellular Vesicle Isolation and Characterization from Yeast Cultures
The cells were gently recovered from each plate with an inoculation loop and suspended in PBS (30 ml). For removal of the cells and debris, the suspensions were first centrifuged at 5000 × g for 15 min at 4°C, and the resulting supernatants were centrifuged at 15 000 × g for 15 min at 4°C. The supernatants were filtered through 0.45-μm pore syringe filters and centrifuged at 100 000 × g for 1 h at 4°C to recover EVs. EVs were analyzed by nanoparticle tracking analysis (NTA) on an LM10 nanoparticle analysis system, coupled with a 488-nm laser and equipped with an SCMOS camera and a syringe pump (Malvern Panalytical, Malvern, United Kingdom), as previously published (Reis et al. 2021 (link)). Data were acquired and analyzed using the NTA 3.0 software (Malvern Panalytical).
Variable analysis
- Parental strain cultivation
- Mutant strain cultivation
- Nanoparticle tracking analysis (NTA) of extracellular vesicles (EVs)
- Yeast extract–peptone–dextrose (YPD) medium
- Cultivation time (24 h)
- Cultivation temperature (30°C)
- Shaking during cultivation
- Cell suspension concentration (3.5 × 10^7 cells/ml)
- Inoculation volume (300 μl)
- Incubation time (24 h)
- Incubation temperature (30°C)
- Centrifugation conditions (5000 × g for 15 min at 4°C, 15 000 × g for 15 min at 4°C, 100 000 × g for 1 h at 4°C)
- Filtration through 0.45-μm pore syringe filters
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