Larvae of desired genotype were dissected at 96 h ALH and brains were fixed for 15 min in 3.7% formaldehyde in PBS with 0.1% Triton-X, and later processed for immunochemistry analysis. The following antibodies were used: mouse anti-Mira (Fumio Matsuzaki), 1/30; mouse anti-flag (Sigma), 1/2,000; rabbit anti-Mira49 (link) (generated in our lab), 1/1,000; rabbit anti-Stau (Daniel St Johnston), 1/2,000; rat anti-Brat50 (link) (Yongqing Zhang), 1/500; mouse anti-Pros (DSHB), 1/20; guinea-pig anti-Dpn (generated in our lab), 1/1,000; rabbit anti-Pon (generated in our lab), 1/2,000; rabbit anti-aPKCζ C20 (Santa Cruz Biotechnologies), 1/1,000; chicken anti-GFP (Abcam), 1/5,000. Secondary antibodies were conjugated to Alexa Fluor 488, Alexa Fluor 555, or Alexa Fluor 633 (Molecular Probes), and used at 1/500, 1/1,000, and 1/250, respectively. TO-PRO-3 (Invitrogen) was used at 1/5,000 for DNA staining and samples were mounted in Vectashield (Vector Laboratories). Images were obtained using Zeiss LSM 510 upright or Leica SP II upright microscope and processed in Adobe Photoshop CS6 and Adobe Illustrator CS6.
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