Immunohistochemistry (IHC) was performed on tissue arrays from PCa (CA3, SuperBioChips Tissue Array, Tema Ricerca, Italy) as previously described [35 (link)]. The primary antibodies used were as follows: anti-p65 (RB-1638-R7, ready to use, NeoMarker, Thermo Fisher Scientific, Fremont, CA, USA); anti-Shh (sc-1194 N19) (1:50, Santa Cruz Biotechnology); anti-GLI1 (sc-20687 H-300) (1:50, Santa Cruz Biotechnology, Dallas, Texas, USA). Immunoreactions were visualized using the Avidin/Biotinylated enzyme Complex (ABC) (VECTASTAIN Elite ABC System, Burlingame, CA, USA) and sections were counterstained using Mayer’s hematoxylin (Emallume Carazzi Bio-Optica, Milano, Italy). Histological images were acquired using a Nikon Eclipse E200 microscope equipped with a Leica DFC310 FX Digital Camera. The percentage of positive area was quantified using the QuPath Software [36 (link)].
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