Evaluating DNA Supercoiling via Biotinylated-Psoralen
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Corresponding Organization :
Other organizations : Universidad Pablo de Olavide, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla, National Cancer Centre Japan, National Institute of Environmental Health Sciences, National Institutes of Health
Variable analysis
- BPsoralen concentration (75 μM)
- Digitonin concentration (0.01%)
- UV crosslinking time (10 minutes)
- Degree of DNA supercoiling
- Biotin-psoralen incorporation in the nucleus
- ERα density in high density regions (HDR) of the nucleus
- Cell culture on polylysine pre-treated glass slides
- Room temperature (for bPsoralen and UV crosslinking)
- Dark conditions (for bPsoralen incubation)
- PFA-PBS fixation (4%, 15 minutes)
- BSA-PBS blocking (5%)
- Primary antibody concentrations (1:2500 for α-ERα, 1:1000 for α-biotin)
- Secondary antibody incubation (30 minutes)
- DAPI counterstaining and ProLong mounting for imaging
- Cells pretreated with triptolide (10 μM, 5 h)
- Cells not treated with triptolide
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